PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 249aa    MW: 27774.9 Da    PI: 6.1612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99830.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rgrW++eEde l+++ k++ ++ +W t +++ g++R++k+c++rw++yl
       KHM99830.1 14 RGRWSPEEDETLKNYLKKHATPgNWITLPQKAGLKRCGKSCRLRWLNYL 62
                     8**********************************************97 PP

2Myb_DNA-binding44.43.9e-1469112246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd+ +  + +  G+++W++Ia+ ++ gRt++++k++w++
       KHM99830.1  69 GGFTHEEDQFICSLYATIGTRQWSLIAAQLP-GRTDNDVKNHWNT 112
                      569****************************.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.46962IPR017930Myb domain
SuperFamilySSF466894.77E-2511110IPR009057Homeodomain-like
SMARTSM007171.2E-101364IPR001005SANT/Myb domain
PfamPF002491.9E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-221569IPR009057Homeodomain-like
CDDcd001678.24E-81662No hitNo description
PROSITE profilePS5129420.94263118IPR017930Myb domain
SMARTSM007178.2E-1267116IPR001005SANT/Myb domain
PfamPF002498.1E-1369112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2270116IPR009057Homeodomain-like
CDDcd001671.96E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGRWSPE EDETLKNYLK KHATPGNWIT LPQKAGLKRC GKSCRLRWLN  60
YLRPHIKHGG FTHEEDQFIC SLYATIGTRQ WSLIAAQLPG RTDNDVKNHW NTKLKKMFLA  120
ANTNATGNTV FSTPTSQPQV EDCSVFDDHE NSAEYHVLGL EQTPLPLGSD VSGLGSSCSV  180
PLSNEAVSAS LVKEENENGT QWFGEDESFL LDFVYEDNGF VSLENSSEVA PSFGSLYAPN  240
TTEKRKRDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-21141167106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160258.11e-119hypothetical protein PHAVU_002G306000g
TrEMBLA0A0B2NRX30.0A0A0B2NRX3_GLYSO; Transcription factor RAX3
STRINGGLYMA05G36120.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-67myb domain protein 36
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]